J3_7PIA_009
3D structure
- PDB id
- 7PIA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.6 Å
Loop
- Sequence
- GC*GGAAUUU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIA_009 not in the Motif Atlas
- Homologous match to J3_5J7L_001
- Geometric discrepancy: 0.2684
- The information below is about J3_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7PIA|1|5|G|47
7PIA|1|5|C|48
*
7PIA|1|5|G|357
7PIA|1|5|G|358
7PIA|1|5|A|359
7PIA|1|5|A|360
7PIA|1|5|U|361
7PIA|1|5|U|362
7PIA|1|5|U|363
*
7PIA|1|5|A|389
7PIA|1|5|G|390
7PIA|1|5|C|391
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain K
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S16
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