J3_7PIA_021
3D structure
- PDB id
- 7PIA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.6 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 7PIA|1|3|A|76
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIA_021 not in the Motif Atlas
- Homologous match to J3_4WF9_013
- Geometric discrepancy: 0.2873
- The information below is about J3_4WF9_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
7PIA|1|3|A|58
7PIA|1|3|C|59
*
7PIA|1|3|G|72
7PIA|1|3|A|73
7PIA|1|3|U|74
7PIA|1|3|A|75
7PIA|1|3|A|76
7PIA|1|3|G|77
7PIA|1|3|C|78
*
7PIA|1|3|G|111
7PIA|1|3|A|112
7PIA|1|3|U|113
7PIA|1|3|U|114
7PIA|1|3|U|115
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L34
- Chain s
- 50S ribosomal protein L23
- Chain w
- 50S ribosomal protein L29
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