J3_7PIR_001

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GC*GUGAAAAG*UC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PIR_001 not in the Motif Atlas

Geometric match to J3_4V9F_011

Geometric discrepancy: 0.3574

The information below is about J3_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

7PIR|1|3|G|32
7PIR|1|3|C|33
*
7PIR|1|3|G|510
7PIR|1|3|U|511
7PIR|1|3|G|512
7PIR|1|3|A|513
7PIR|1|3|A|514
7PIR|1|3|A|515
7PIR|1|3|A|516
7PIR|1|3|G|517
*
7PIR|1|3|U|544
7PIR|1|3|C|545

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain t

50S ribosomal protein L24