J3_7PIR_007

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

7PIR|1|3|U|1330

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PIR_007 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.391

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

7PIR|1|3|C|1326
7PIR|1|3|G|1327
7PIR|1|3|A|1328
7PIR|1|3|U|1329
7PIR|1|3|U|1330
7PIR|1|3|G|1331
*
7PIR|1|3|C|1659
7PIR|1|3|A|1660
7PIR|1|3|A|1661
*
7PIR|1|3|U|1673
7PIR|1|3|A|1674
7PIR|1|3|A|1675
7PIR|1|3|G|1676

Current chains

Chain 3

23S ribosomal RNA

Nearby chains