J3_7PIR_013

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GCCCAUGU*AGC*GAAAGC

Length

17 nucleotides

Bulged bases

7PIR|1|4|U|12, 7PIR|1|4|A|98

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PIR|1|4|G|7
7PIR|1|4|C|8
7PIR|1|4|C|9
7PIR|1|4|C|10
7PIR|1|4|A|11
7PIR|1|4|U|12
7PIR|1|4|G|13
7PIR|1|4|U|14
*
7PIR|1|4|A|66
7PIR|1|4|G|67
7PIR|1|4|C|68
*
7PIR|1|4|G|96
7PIR|1|4|A|97
7PIR|1|4|A|98
7PIR|1|4|A|99
7PIR|1|4|G|100
7PIR|1|4|C|101

Current chains

Chain 4

5S ribosomal RNA

Nearby chains

Chain 3

Large subunit ribosomal RNA; LSU rRNA

Chain n

50S ribosomal protein L18

Chain u

50S ribosomal protein L27