J3_7PIR_018
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- GCUUAAUUC*GAAAAACCUUAC*GGCUGC
- Length
- 27 nucleotides
- Bulged bases
- 7PIR|1|5|A|970, 7PIR|1|5|A|971, 7PIR|1|5|A|973, 7PIR|1|5|U|1199
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIR_018 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.5749
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7PIR|1|5|G|949
7PIR|1|5|C|950
7PIR|1|5|U|951
7PIR|1|5|U|952
7PIR|1|5|A|953
7PIR|1|5|A|954
7PIR|1|5|U|955
7PIR|1|5|U|956
7PIR|1|5|C|957
*
7PIR|1|5|G|968
7PIR|1|5|A|969
7PIR|1|5|A|970
7PIR|1|5|A|971
7PIR|1|5|A|972
7PIR|1|5|A|973
7PIR|1|5|C|974
7PIR|1|5|C|975
7PIR|1|5|U|976
7PIR|1|5|U|977
7PIR|1|5|A|978
7PIR|1|5|C|979
*
7PIR|1|5|G|1196
7PIR|1|5|G|1197
7PIR|1|5|C|1198
7PIR|1|5|U|1199
7PIR|1|5|G|1200
7PIR|1|5|C|1201
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain I
- 30S ribosomal protein S10
- Chain L
- 30S ribosomal protein S13
- Chain M
- 30S ribosomal protein S14 type Z
- Chain R
- 30S ribosomal protein S19
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