J3_7PIR_021
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGAA
- Length
- 20 nucleotides
- Bulged bases
- 7PIR|1|5|A|1158
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PIR_021 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.3806
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7PIR|1|5|U|1107
7PIR|1|5|A|1108
7PIR|1|5|U|1109
*
7PIR|1|5|A|1131
7PIR|1|5|G|1132
7PIR|1|5|A|1133
7PIR|1|5|C|1134
7PIR|1|5|U|1135
7PIR|1|5|G|1136
7PIR|1|5|C|1137
*
7PIR|1|5|G|1150
7PIR|1|5|A|1151
7PIR|1|5|G|1152
7PIR|1|5|G|1153
7PIR|1|5|A|1154
7PIR|1|5|A|1155
7PIR|1|5|G|1156
7PIR|1|5|G|1157
7PIR|1|5|A|1158
7PIR|1|5|A|1159
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain A
- 30S ribosomal protein S2
- Chain H
- 30S ribosomal protein S9
- Chain I
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S14 type Z
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