J3_7PJS_022

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

7PJS|1|a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJS_022 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1023

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7PJS|1|a|G|46
7PJS|1|a|C|47
7PJS|1|a|C|48
7PJS|1|a|U|49
7PJS|1|a|A|50
7PJS|1|a|A|51
7PJS|1|a|C|52
*
7PJS|1|a|G|359
7PJS|1|a|G|360
7PJS|1|a|G|361
7PJS|1|a|G|362
7PJS|1|a|A|363
7PJS|1|a|A|364
7PJS|1|a|U|365
7PJS|1|a|A|366
7PJS|1|a|U|367
*
7PJS|1|a|A|393
7PJS|1|a|G|394
7PJS|1|a|C|395

Current chains

Chain a

16S ribosomal RNA

Nearby chains