J3_7PJT_003

3D structure

PDB id

7PJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7PJT|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJT_003 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1789

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7PJT|1|A|G|297
7PJT|1|A|G|298
7PJT|1|A|A|299
7PJT|1|A|A|300
7PJT|1|A|G|301
*
7PJT|1|A|C|316
7PJT|1|A|G|317
7PJT|1|A|C|318
7PJT|1|A|G|319
7PJT|1|A|A|320
7PJT|1|A|U|321
7PJT|1|A|A|322
7PJT|1|A|C|323
7PJT|1|A|A|324
7PJT|1|A|G|325
*
7PJT|1|A|C|337
7PJT|1|A|G|338
7PJT|1|A|U|339
7PJT|1|A|A|340
7PJT|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24