J3_7PJT_010

3D structure

PDB id

7PJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

ACUG*CUAAC*GGACAGU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJT_010 not in the Motif Atlas

Geometric match to J3_4V9F_007

Geometric discrepancy: 0.2362

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97609.1

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7PJT|1|A|A|2090
7PJT|1|A|C|2091
7PJT|1|A|U|2092
7PJT|1|A|G|2093
*
7PJT|1|A|C|2196
7PJT|1|A|U|2197
7PJT|1|A|A|2198
7PJT|1|A|A|2199
7PJT|1|A|C|2200
*
7PJT|1|A|G|2223
7PJT|1|A|G|2224
7PJT|1|A|A|2225
7PJT|1|A|C|2226
7PJT|1|A|A|2227
7PJT|1|A|G|2228
7PJT|1|A|U|2229

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28