J3_7PJT_031

3D structure

PDB id

7PJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJT_031 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.1415

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7PJT|1|A|G|1424
7PJT|1|A|G|1425
7PJT|1|A|G|1426
7PJT|1|A|A|1427
7PJT|1|A|C|1428
7PJT|1|A|G|1429
*
7PJT|1|A|C|1564
7PJT|1|A|C|1565
*
7PJT|1|A|G|1568
7PJT|1|A|A|1569
7PJT|1|A|A|1570
7PJT|1|A|A|1571
7PJT|1|A|A|1572
7PJT|1|A|G|1573
7PJT|1|A|C|1574

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2