J3_7PJU_010

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJU_010 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0908

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7PJU|1|A|C|2091
7PJU|1|A|U|2092
7PJU|1|A|G|2093
*
7PJU|1|A|C|2196
7PJU|1|A|U|2197
7PJU|1|A|A|2198
7PJU|1|A|A|2199
7PJU|1|A|C|2200
*
7PJU|1|A|G|2223
7PJU|1|A|G|2224
7PJU|1|A|A|2225
7PJU|1|A|C|2226
7PJU|1|A|A|2227
7PJU|1|A|G|2228

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28