J3_7PJV_014

3D structure

PDB id

7PJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

7PJV|1|A|U|2833, 7PJV|1|A|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJV_014 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.1481

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7PJV|1|A|G|2812
7PJV|1|A|A|2813
7PJV|1|A|A|2814
7PJV|1|A|C|2815
*
7PJV|1|A|G|2831
7PJV|1|A|U|2832
7PJV|1|A|U|2833
7PJV|1|A|G|2834
7PJV|1|A|A|2835
7PJV|1|A|U|2836
*
7PJV|1|A|A|2882
7PJV|1|A|A|2883
7PJV|1|A|U|2884
7PJV|1|A|G|2885
7PJV|1|A|A|2886
7PJV|1|A|A|2887
7PJV|1|A|C|2888

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17