J3_7PJW_004

3D structure

PDB id

7PJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7PJW|1|A|U|686, 7PJW|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJW_004 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3416

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7PJW|1|A|U|683
7PJW|1|A|G|684
7PJW|1|A|A|685
7PJW|1|A|U|686
7PJW|1|A|C|687
7PJW|1|A|U|688
7PJW|1|A|A|689
*
7PJW|1|A|U|773
7PJW|1|A|G|774
7PJW|1|A|G|775
*
7PJW|1|A|C|791
7PJW|1|A|A|792
7PJW|1|A|A|793
7PJW|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2