J3_7PJX_014

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

7PJX|1|A|U|2833, 7PJX|1|A|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJX_014 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.1481

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7PJX|1|A|G|2812
7PJX|1|A|A|2813
7PJX|1|A|A|2814
7PJX|1|A|C|2815
*
7PJX|1|A|G|2831
7PJX|1|A|U|2832
7PJX|1|A|U|2833
7PJX|1|A|G|2834
7PJX|1|A|A|2835
7PJX|1|A|U|2836
*
7PJX|1|A|A|2882
7PJX|1|A|A|2883
7PJX|1|A|U|2884
7PJX|1|A|G|2885
7PJX|1|A|A|2886
7PJX|1|A|A|2887
7PJX|1|A|C|2888

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17