J3_7PJX_023

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJX_023 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1375

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

7PJX|1|a|C|990
7PJX|1|a|U|991
7PJX|1|a|U|992
7PJX|1|a|G|993
*
7PJX|1|a|C|1045
7PJX|1|a|A|1046
7PJX|1|a|G|1047
*
7PJX|1|a|C|1210
7PJX|1|a|U|1211
7PJX|1|a|U|1212
7PJX|1|a|A|1213
7PJX|1|a|C|1214
7PJX|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14