3D structure

PDB id
7PJY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7PJY_022 not in the Motif Atlas
Homologous match to J3_5J7L_008
Geometric discrepancy: 0.1094
The information below is about J3_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

7PJY|1|a|C|1063
7PJY|1|a|G|1064
7PJY|1|a|U|1065
7PJY|1|a|C|1066
7PJY|1|a|A|1067
7PJY|1|a|G|1068
*
7PJY|1|a|C|1107
7PJY|1|a|G|1108
7PJY|1|a|C|1109
7PJY|1|a|A|1110
7PJY|1|a|A|1111
7PJY|1|a|C|1112
7PJY|1|a|C|1113
*
7PJY|1|a|G|1187
7PJY|1|a|A|1188
7PJY|1|a|U|1189
7PJY|1|a|G|1190
7PJY|1|a|A|1191
7PJY|1|a|C|1192
7PJY|1|a|G|1193

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain c
30S ribosomal protein S3
Chain e
30S ribosomal protein S5
Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1193 s