3D structure

PDB id
7PJY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
7PJY|1|A|U|34, 7PJY|1|A|U|448, 7PJY|1|A|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7PJY_027 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0928
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

7PJY|1|A|C|32
7PJY|1|A|C|33
7PJY|1|A|U|34
7PJY|1|A|G|35
*
7PJY|1|A|C|445
7PJY|1|A|G|446
7PJY|1|A|A|447
7PJY|1|A|U|448
7PJY|1|A|A|449
7PJY|1|A|G|450
7PJY|1|A|U|451
7PJY|1|A|G|452
7PJY|1|A|A|453
7PJY|1|A|A|454
7PJY|1|A|C|455
7PJY|1|A|C|456
7PJY|1|A|A|457
7PJY|1|A|G|458
7PJY|1|A|U|459
7PJY|1|A|A|460
7PJY|1|A|C|461
*
7PJY|1|A|G|468
7PJY|1|A|G|469
7PJY|1|A|A|470
7PJY|1|A|A|471
7PJY|1|A|A|472
7PJY|1|A|G|473

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain E
50S ribosomal protein L4
Chain Q
50S ribosomal protein L20
Chain T
50S ribosomal protein L23

Coloring options:


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