J3_7PJY_031

3D structure

PDB id

7PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

7PJY|1|a|C|48, 7PJY|1|a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJY_031 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1147

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7PJY|1|a|G|46
7PJY|1|a|C|47
7PJY|1|a|C|48
7PJY|1|a|U|49
7PJY|1|a|A|50
7PJY|1|a|A|51
7PJY|1|a|C|52
*
7PJY|1|a|G|359
7PJY|1|a|G|360
7PJY|1|a|G|361
7PJY|1|a|G|362
7PJY|1|a|A|363
7PJY|1|a|A|364
7PJY|1|a|U|365
7PJY|1|a|A|366
7PJY|1|a|U|367
*
7PJY|1|a|A|393
7PJY|1|a|G|394
7PJY|1|a|C|395

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain x

Elongation factor G