J3_7PJZ_004

3D structure

PDB id

7PJZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7PJZ|1|A|U|686, 7PJZ|1|A|A|792, 7PJZ|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PJZ_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1879

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7PJZ|1|A|U|683
7PJZ|1|A|G|684
7PJZ|1|A|A|685
7PJZ|1|A|U|686
7PJZ|1|A|C|687
7PJZ|1|A|U|688
7PJZ|1|A|A|689
*
7PJZ|1|A|U|773
7PJZ|1|A|G|774
7PJZ|1|A|G|775
*
7PJZ|1|A|C|791
7PJZ|1|A|A|792
7PJZ|1|A|A|793
7PJZ|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2