3D structure

PDB id
7PJZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)
Experimental method
ELECTRON MICROSCOPY
Resolution
6 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
7PJZ|1|A|U|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7PJZ_010 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.1332
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

7PJZ|1|A|C|2295
7PJZ|1|A|U|2296
7PJZ|1|A|A|2297
7PJZ|1|A|A|2298
7PJZ|1|A|U|2299
*
7PJZ|1|A|A|2317
7PJZ|1|A|G|2318
7PJZ|1|A|G|2319
7PJZ|1|A|U|2320
7PJZ|1|A|U|2321
7PJZ|1|A|A|2322
7PJZ|1|A|G|2323
*
7PJZ|1|A|C|2332
7PJZ|1|A|A|2333
7PJZ|1|A|U|2334
7PJZ|1|A|A|2335
7PJZ|1|A|A|2336
7PJZ|1|A|G|2337

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain F
50S ribosomal protein L5
Chain O
50S ribosomal protein L18
Chain W
50S ribosomal protein L27
Chain w
Transfer RNA; tRNA

Coloring options:


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