J3_7PKQ_003
3D structure
- PDB id
- 7PKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of the Chlamydomonas reinhardtii mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UUUAAAUC*GCAAAAUCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 7PKQ|1|3|A|389, 7PKQ|1|3|A|390, 7PKQ|1|3|A|392
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PKQ_003 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1849
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7PKQ|1|3|U|369
7PKQ|1|3|U|370
7PKQ|1|3|U|371
7PKQ|1|3|A|372
7PKQ|1|3|A|373
7PKQ|1|3|A|374
7PKQ|1|3|U|375
7PKQ|1|3|C|376
*
7PKQ|1|3|G|387
7PKQ|1|3|C|388
7PKQ|1|3|A|389
7PKQ|1|3|A|390
7PKQ|1|3|A|391
7PKQ|1|3|A|392
7PKQ|1|3|U|393
7PKQ|1|3|C|394
7PKQ|1|3|U|395
7PKQ|1|3|U|396
7PKQ|1|3|A|397
7PKQ|1|3|C|398
*
7PKQ|1|4|G|109
7PKQ|1|4|G|110
7PKQ|1|4|C|111
7PKQ|1|4|U|112
7PKQ|1|4|A|113
Current chains
- Chain 3
- S3 rRNA
- Chain 4
- S4 rRNA
Nearby chains
- Chain j
- Ribosomal_S10 domain-containing protein
- Chain m
- Mitochondrial ribosomal protein S13
- Chain n
- Mitochondrial ribosomal protein S14
- Chain s
- uS19m
Coloring options: