J3_7PO4_002
3D structure
- PDB id
- 7PO4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 7PO4|1|A|G|1918
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PO4_002 not in the Motif Atlas
- Homologous match to J3_8VTW_001
- Geometric discrepancy: 0.1632
- The information below is about J3_8VTW_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7PO4|1|A|C|1915
7PO4|1|A|G|1916
7PO4|1|A|A|1917
7PO4|1|A|G|1918
7PO4|1|A|C|1919
7PO4|1|A|U|1920
7PO4|1|A|A|1921
*
7PO4|1|A|U|1983
7PO4|1|A|A|1984
7PO4|1|A|G|1985
*
7PO4|1|A|C|2001
7PO4|1|A|G|2002
7PO4|1|A|A|2003
7PO4|1|A|G|2004
Current chains
- Chain A
- 16SrRNA
Nearby chains
- Chain 2
- 39S ribosomal protein L34, mitochondrial
- Chain 9
- 39S ribosomal protein L41, mitochondrial
- Chain D
- 39S ribosomal protein L2, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
Coloring options: