J3_7PWG_005
3D structure
- PDB id
- 7PWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- UGAGGGG*CGG*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 7PWG|1|1|G|1165
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWG_005 not in the Motif Atlas
- Homologous match to J3_8C3A_006
- Geometric discrepancy: 0.1362
- The information below is about J3_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
7PWG|1|1|U|1162
7PWG|1|1|G|1163
7PWG|1|1|A|1164
7PWG|1|1|G|1165
7PWG|1|1|G|1166
7PWG|1|1|G|1167
7PWG|1|1|G|1168
*
7PWG|1|1|C|1488
7PWG|1|1|G|1489
7PWG|1|1|G|1490
*
7PWG|1|1|U|1502
7PWG|1|1|C|1503
7PWG|1|1|U|1504
7PWG|1|1|A|1505
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain R
- Ribosomal protein L19
- Chain g
- Ribosomal protein L34
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