J3_7PWG_018
3D structure
- PDB id
- 7PWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CGACG*CC*GAAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWG_018 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1178
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.1
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7PWG|1|1|C|1319
7PWG|1|1|G|1320
7PWG|1|1|A|1321
7PWG|1|1|C|1322
7PWG|1|1|G|1323
*
7PWG|1|1|C|1433
7PWG|1|1|C|1434
*
7PWG|1|1|G|1438
7PWG|1|1|A|1439
7PWG|1|1|A|1440
7PWG|1|1|A|1441
7PWG|1|1|A|1442
7PWG|1|1|G|1443
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain A
- Ribosomal protein L2
- Chain g
- Ribosomal protein L34
- Chain p
- Ribosomal protein L37a
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