J3_7PWO_015
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- ACCG*CGCCGGCCG*CGCCU
- Length
- 18 nucleotides
- Bulged bases
- 7PWO|1|2|C|686
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_015 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.2139
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7PWO|1|2|A|633
7PWO|1|2|C|634
7PWO|1|2|C|635
7PWO|1|2|G|636
*
7PWO|1|2|C|680
7PWO|1|2|G|681
7PWO|1|2|C|682
7PWO|1|2|C|683
7PWO|1|2|G|684
7PWO|1|2|G|685
7PWO|1|2|C|686
7PWO|1|2|C|687
7PWO|1|2|G|688
*
7PWO|1|2|C|695
7PWO|1|2|G|696
7PWO|1|2|C|697
7PWO|1|2|C|698
7PWO|1|2|U|699
Current chains
- Chain 2
- rRNA 18S
Nearby chains
- Chain A2
- Ribosomal protein L2
- Chain B1
- 40S ribosomal protein S3a
- Chain N1
- Ribosomal protein S13
- Chain O1
- Ribosomal protein S14
- Chain a1
- 40S ribosomal protein S26
- Chain p2
- Ribosomal protein L37a
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