J3_7PWO_027
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CGAUAGCGGACCAAGUAG*CGAACG*CUCG
- Length
- 28 nucleotides
- Bulged bases
- 7PWO|1|1|U|293, 7PWO|1|1|C|301, 7PWO|1|1|A|302, 7PWO|1|42|C|24
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_027 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.1637
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
7PWO|1|1|C|290
7PWO|1|1|G|291
7PWO|1|1|A|292
7PWO|1|1|U|293
7PWO|1|1|A|294
7PWO|1|1|G|295
7PWO|1|1|C|296
7PWO|1|1|G|297
7PWO|1|1|G|298
7PWO|1|1|A|299
7PWO|1|1|C|300
7PWO|1|1|C|301
7PWO|1|1|A|302
7PWO|1|1|A|303
7PWO|1|1|G|304
7PWO|1|1|U|305
7PWO|1|1|A|306
7PWO|1|1|G|307
*
7PWO|1|1|C|314
7PWO|1|1|G|315
7PWO|1|1|A|316
7PWO|1|1|A|317
7PWO|1|1|C|318
7PWO|1|1|G|319
*
7PWO|1|42|C|22
7PWO|1|42|U|23
7PWO|1|42|C|24
7PWO|1|42|G|25
Current chains
- Chain 1
- rRNA 28S
- Chain 42
- rRNA 5.8S
Nearby chains
- Chain C2
- Ribosomal protein L4
- Chain Y2
- Ribosomal protein L26
- Chain j2
- Ribosomal protein L37
- Chain l2
- Ribosomal protein L39
Coloring options: