J3_7PWO_031
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GGC*GGACGGC*GAGGACGGC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PWO_031 not in the Motif Atlas
- Geometric match to J3_5J7L_054
- Geometric discrepancy: 0.2242
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7PWO|1|2|G|1076
7PWO|1|2|G|1077
7PWO|1|2|C|1078
*
7PWO|1|2|G|1092
7PWO|1|2|G|1093
7PWO|1|2|A|1094
7PWO|1|2|C|1095
7PWO|1|2|G|1096
7PWO|1|2|G|1097
7PWO|1|2|C|1098
*
7PWO|1|2|G|1111
7PWO|1|2|A|1112
7PWO|1|2|G|1113
7PWO|1|2|G|1114
7PWO|1|2|A|1115
7PWO|1|2|C|1116
7PWO|1|2|G|1117
7PWO|1|2|G|1118
7PWO|1|2|C|1119
Current chains
- Chain 2
- rRNA 18S
Nearby chains
- Chain F1
- Ribosomal protein S5
- Chain Q1
- Ribosomal protein S16
- Chain R1
- Ribosomal protein S17
- Chain U1
- Ribosomal protein S20
Coloring options: