J3_7PZY_018

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CC*GAUG*CUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7PZY_018 not in the Motif Atlas

Homologous match to J3_8C3A_058

Geometric discrepancy: 0.0782

The information below is about J3_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34320.1

Basepair signature

cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7PZY|1|1|C|3263
7PZY|1|1|C|3264
*
7PZY|1|1|G|3280
7PZY|1|1|A|3281
7PZY|1|1|U|3282
7PZY|1|1|G|3283
*
7PZY|1|1|C|3353
7PZY|1|1|U|3354
7PZY|1|1|G|3355

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AE

Ribosomal 60S subunit protein L31B

Chain k

60S ribosomal protein L3

Chain x

Ribosomal 60S subunit protein L17B