J3_8C3A_058

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GAUG*CUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34320.1

Basepair signature

cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

8C3A|1|1|C|3263
8C3A|1|1|C|3264
*
8C3A|1|1|G|3280
8C3A|1|1|A|3281
8C3A|1|1|U|3282
8C3A|1|1|G|3283
*
8C3A|1|1|C|3353
8C3A|1|1|U|3354
8C3A|1|1|G|3355

Current chains

Chain 1

25S

Nearby chains

Chain AE

60S ribosomal protein L31-B

Chain k

60S ribosomal protein L3

Chain x

Ribosomal protein L22