J3_7PZY_025
3D structure
- PDB id
- 7PZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the vacant Candida albicans 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.32 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PZY_025 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.0491
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7PZY|1|A|C|1146
7PZY|1|A|C|1147
7PZY|1|A|A|1148
7PZY|1|A|G|1149
*
7PZY|1|A|C|1568
7PZY|1|A|U|1569
7PZY|1|A|A|1570
7PZY|1|A|G|1571
7PZY|1|A|U|1572
7PZY|1|A|A|1573
7PZY|1|A|A|1574
*
7PZY|1|A|U|1596
7PZY|1|A|G|1597
7PZY|1|A|A|1598
7PZY|1|A|U|1599
7PZY|1|A|U|1600
7PZY|1|A|A|1601
7PZY|1|A|C|1602
7PZY|1|A|G|1603
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- Ribosomal 40S subunit protein S5
- Chain R
- Ribosomal 40S subunit protein S16A
- Chain d
- Ribosomal 40S subunit protein S28B
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