J3_7PZY_043
3D structure
- PDB id
- 7PZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the vacant Candida albicans 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.32 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 7PZY|1|A|U|1399, 7PZY|1|A|U|1400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7PZY_043 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.0634
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7PZY|1|A|A|1321
7PZY|1|A|A|1322
7PZY|1|A|C|1323
*
7PZY|1|A|G|1372
7PZY|1|A|G|1373
7PZY|1|A|A|1374
7PZY|1|A|C|1375
7PZY|1|A|U|1376
7PZY|1|A|A|1377
*
7PZY|1|A|U|1393
7PZY|1|A|G|1394
7PZY|1|A|G|1395
7PZY|1|A|A|1396
7PZY|1|A|A|1397
7PZY|1|A|G|1398
7PZY|1|A|U|1399
7PZY|1|A|U|1400
7PZY|1|A|U|1401
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- Ribosomal 40S subunit protein S5
- Chain R
- Ribosomal 40S subunit protein S16A
- Chain S
- Ribosomal 40S subunit protein S17B
- Chain V
- Ribosomal 40S subunit protein S20
- Chain e
- Ribosomal 40S subunit protein S29A
- Chain h
- Guanine nucleotide-binding protein subunit beta-like protein
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