J3_7Q08_041
3D structure
- PDB id
- 7Q08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cycloheximide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 7Q08|1|4|U|60, 7Q08|1|4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7Q08_041 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0717
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7Q08|1|4|A|44
7Q08|1|4|C|45
*
7Q08|1|4|G|58
7Q08|1|4|A|59
7Q08|1|4|U|60
7Q08|1|4|A|61
7Q08|1|4|C|62
7Q08|1|4|G|63
7Q08|1|4|U|64
*
7Q08|1|4|A|96
7Q08|1|4|A|97
7Q08|1|4|U|98
7Q08|1|4|C|99
7Q08|1|4|U|100
Current chains
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 8
- Ribosomal 60S subunit protein L25
- Chain AI
- Ribosomal 60S subunit protein L35A
- Chain AK
- Ribosomal protein L37
- Chain AM
- 60S ribosomal protein L39
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