J3_7Q0F_041
3D structure
- PDB id
- 7Q0F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with phyllanthoside
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*(OMG)GUGCC
- Length
- 21 nucleotides
- Bulged bases
- 7Q0F|1|1|C|2732, 7Q0F|1|1|C|2769
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7Q0F_041 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0561
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7Q0F|1|1|G|2623
7Q0F|1|1|U|2624
7Q0F|1|1|C|2625
*
7Q0F|1|1|G|2726
7Q0F|1|1|C|2727
7Q0F|1|1|C|2728
7Q0F|1|1|U|2729
7Q0F|1|1|A|2730
7Q0F|1|1|U|2731
7Q0F|1|1|C|2732
7Q0F|1|1|G|2733
7Q0F|1|1|A|2734
7Q0F|1|1|U|2735
7Q0F|1|1|C|2736
7Q0F|1|1|C|2737
*
7Q0F|1|1|OMG|2765
7Q0F|1|1|G|2766
7Q0F|1|1|U|2767
7Q0F|1|1|G|2768
7Q0F|1|1|C|2769
7Q0F|1|1|C|2770
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Ribosomal 60S subunit protein L21A
- Chain AB
- Ribosomal 60S subunit protein L28
- Chain AP
- Ribosomal 60S subunit protein L42A
- Chain y
- Ribosomal 60S subunit protein L18A
Coloring options: