J3_7Q0R_036
3D structure
- PDB id
- 7Q0R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Candida albicans 80S ribosome in complex with blasticidin s
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 7Q0R|1|1|A|398, 7Q0R|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7Q0R_036 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.0663
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7Q0R|1|1|A|369
7Q0R|1|1|U|370
7Q0R|1|1|G|371
7Q0R|1|1|A|372
7Q0R|1|1|A|373
7Q0R|1|1|A|374
7Q0R|1|1|A|375
7Q0R|1|1|G|376
7Q0R|1|1|A|377
7Q0R|1|1|A|378
7Q0R|1|1|C|379
*
7Q0R|1|1|G|390
7Q0R|1|1|A|391
7Q0R|1|1|G|392
7Q0R|1|1|U|393
7Q0R|1|1|G|394
7Q0R|1|1|A|395
7Q0R|1|1|A|396
7Q0R|1|1|A|397
7Q0R|1|1|A|398
7Q0R|1|1|A|399
7Q0R|1|1|G|400
7Q0R|1|1|U|401
7Q0R|1|1|A|402
7Q0R|1|1|C|403
7Q0R|1|1|G|404
*
7Q0R|1|4|C|19
7Q0R|1|4|U|20
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 9
- Ribosomal 60S subunit protein L26B
- Chain AM
- 60S ribosomal protein L39
- Chain l
- Ribosomal 60S subunit protein L4B
- Chain x
- Ribosomal 60S subunit protein L17B
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