J3_7Q0R_042
3D structure
- PDB id
- 7Q0R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Candida albicans 80S ribosome in complex with blasticidin s
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 7Q0R|1|A|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7Q0R_042 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0453
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7Q0R|1|A|A|41
7Q0R|1|A|G|42
7Q0R|1|A|A|43
7Q0R|1|A|U|44
7Q0R|1|A|U|45
7Q0R|1|A|A|46
7Q0R|1|A|A|47
7Q0R|1|A|G|48
*
7Q0R|1|A|C|429
7Q0R|1|A|G|430
7Q0R|1|A|C|431
7Q0R|1|A|G|432
7Q0R|1|A|C|433
7Q0R|1|A|A|434
7Q0R|1|A|A|435
7Q0R|1|A|A|436
7Q0R|1|A|U|437
*
7Q0R|1|A|A|462
7Q0R|1|A|G|463
7Q0R|1|A|U|464
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain K
- Ribosomal 40S subunit protein S9B
- Chain Y
- Ribosomal 40S subunit protein S23B
Coloring options: