J3_7Q4K_012

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

7Q4K|1|AA|U|1240, 7Q4K|1|AA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Q4K_012 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1266

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7Q4K|1|AA|C|1237
7Q4K|1|AA|A|1238
7Q4K|1|AA|A|1239
7Q4K|1|AA|U|1240
7Q4K|1|AA|G|1241
*
7Q4K|1|AA|C|1296
7Q4K|1|AA|G|1297
7Q4K|1|AA|U|1298
7Q4K|1|AA|A|1299
7Q4K|1|AA|G|1300
7Q4K|1|AA|U|1301
7Q4K|1|AA|C|1302
7Q4K|1|AA|C|1303
*
7Q4K|1|AA|G|1334
7Q4K|1|AA|U|1335
7Q4K|1|AA|C|1336
7Q4K|1|AA|G|1337

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13

Chain D3

Transfer RNA; tRNA