J3_7Q4K_032
3D structure
- PDB id
- 7Q4K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7Q4K|1|BA|U|34, 7Q4K|1|BA|U|448, 7Q4K|1|BA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7Q4K_032 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0626
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7Q4K|1|BA|C|32
7Q4K|1|BA|C|33
7Q4K|1|BA|U|34
7Q4K|1|BA|G|35
*
7Q4K|1|BA|C|445
7Q4K|1|BA|G|446
7Q4K|1|BA|A|447
7Q4K|1|BA|U|448
7Q4K|1|BA|A|449
7Q4K|1|BA|G|450
7Q4K|1|BA|U|451
7Q4K|1|BA|G|452
7Q4K|1|BA|A|453
7Q4K|1|BA|A|454
7Q4K|1|BA|C|455
7Q4K|1|BA|C|456
7Q4K|1|BA|A|457
7Q4K|1|BA|G|458
7Q4K|1|BA|U|459
7Q4K|1|BA|A|460
7Q4K|1|BA|C|461
*
7Q4K|1|BA|G|468
7Q4K|1|BA|G|469
7Q4K|1|BA|A|470
7Q4K|1|BA|A|471
7Q4K|1|BA|A|472
7Q4K|1|BA|G|473
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B2
- 50S ribosomal protein L34
- Chain BE
- 50S ribosomal protein L4
- Chain BQ
- 50S ribosomal protein L20
- Chain BT
- 50S ribosomal protein L23
Coloring options: