J3_7Q4K_037

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

7Q4K|1|AA|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Q4K_037 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.2393

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7Q4K|1|AA|U|1073
7Q4K|1|AA|G|1074
*
7Q4K|1|AA|U|1083
7Q4K|1|AA|G|1084
7Q4K|1|AA|U|1085
7Q4K|1|AA|U|1086
*
7Q4K|1|AA|G|1099
7Q4K|1|AA|C|1100
7Q4K|1|AA|A|1101
7Q4K|1|AA|A|1102

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AE

30S ribosomal protein S5