J3_7QCA_002

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GC*GAUAUG*CGUCC

Length

13 nucleotides

Bulged bases

7QCA|1|L50|U|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|L50|G|44
7QCA|1|L50|C|45
*
7QCA|1|L50|G|58
7QCA|1|L50|A|59
7QCA|1|L50|U|60
7QCA|1|L50|A|61
7QCA|1|L50|U|62
7QCA|1|L50|G|63
*
7QCA|1|L50|C|89
7QCA|1|L50|G|90
7QCA|1|L50|U|91
7QCA|1|L50|C|92
7QCA|1|L50|C|93

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LHH

Ribosomal L29 protein

Chain LJJ

eL37 LJJ

Chain LLL

60S ribosomal protein L39

Chain LX0

60S ribosomal protein L23a