J3_7QCA_008

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAAG*CACAC*GGACAAAG

Length

17 nucleotides

Bulged bases

7QCA|1|L50|A|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|L50|C|1867
7QCA|1|L50|A|1868
7QCA|1|L50|A|1869
7QCA|1|L50|G|1870
*
7QCA|1|L50|C|1948
7QCA|1|L50|A|1949
7QCA|1|L50|C|1950
7QCA|1|L50|A|1951
7QCA|1|L50|C|1952
*
7QCA|1|L50|G|1961
7QCA|1|L50|G|1962
7QCA|1|L50|A|1963
7QCA|1|L50|C|1964
7QCA|1|L50|A|1965
7QCA|1|L50|A|1966
7QCA|1|L50|A|1967
7QCA|1|L50|G|1968

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8

Chain LG0

60S ribosomal protein L8

Chain LII

60S ribosomal protein L36

Chain LN0

Ribosomal protein L15