J3_7QCA_012

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CCAUAU*AGC*GUG

Length

12 nucleotides

Bulged bases

7QCA|1|L70|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|L70|C|9
7QCA|1|L70|C|10
7QCA|1|L70|A|11
7QCA|1|L70|U|12
7QCA|1|L70|A|13
7QCA|1|L70|U|14
*
7QCA|1|L70|A|65
7QCA|1|L70|G|66
7QCA|1|L70|C|67
*
7QCA|1|L70|G|108
7QCA|1|L70|U|109
7QCA|1|L70|G|110

Current chains

Chain L70

RNA 5S

Nearby chains

Chain L50

Large subunit ribosomal RNA; LSU rRNA

Chain LD0

60S ribosomal protein L5

Chain LI0

S60 ribosomal protein L10

Chain LT0

60s ribosomal protein L21