J3_7QCA_017

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUGUG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|S60|C|842
7QCA|1|S60|A|843
7QCA|1|S60|A|844
7QCA|1|S60|G|845
*
7QCA|1|S60|C|1183
7QCA|1|S60|U|1184
7QCA|1|S60|A|1185
7QCA|1|S60|G|1186
7QCA|1|S60|U|1187
7QCA|1|S60|A|1188
7QCA|1|S60|A|1189
*
7QCA|1|S60|U|1212
7QCA|1|S60|G|1213
7QCA|1|S60|A|1214
7QCA|1|S60|A|1215
7QCA|1|S60|U|1216
7QCA|1|S60|G|1217
7QCA|1|S60|U|1218
7QCA|1|S60|G|1219

Current chains

Chain S60

RNA SSU

Nearby chains

Chain SCC

eS28 SCC

Chain SF0

40S ribosomal protein S5

Chain SQ0

40S ribosomal protein S16