J3_7QCA_018

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|S60|U|849
7QCA|1|S60|G|850
7QCA|1|S60|G|851
7QCA|1|S60|A|852
*
7QCA|1|S60|U|1099
7QCA|1|S60|A|1100
7QCA|1|S60|C|1101
*
7QCA|1|S60|G|1176
7QCA|1|S60|G|1177
7QCA|1|S60|A|1178
7QCA|1|S60|A|1179

Current chains

Chain S60

RNA SSU

Nearby chains

Chain SF0

40S ribosomal protein S5

Chain SQ0

40S ribosomal protein S16

Chain SS0

40S ribosomal protein S18

Chain ST0

40S Ribosomal protein S19