J3_7QCA_019

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUUAAUUU*GGGACAGCUUAC*GGCUG

Length

25 nucleotides

Bulged bases

7QCA|1|S60|G|880, 7QCA|1|S60|A|882, 7QCA|1|S60|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|S60|C|861
7QCA|1|S60|U|862
7QCA|1|S60|U|863
7QCA|1|S60|A|864
7QCA|1|S60|A|865
7QCA|1|S60|U|866
7QCA|1|S60|U|867
7QCA|1|S60|U|868
*
7QCA|1|S60|G|879
7QCA|1|S60|G|880
7QCA|1|S60|G|881
7QCA|1|S60|A|882
7QCA|1|S60|C|883
7QCA|1|S60|A|884
7QCA|1|S60|G|885
7QCA|1|S60|C|886
7QCA|1|S60|U|887
7QCA|1|S60|U|888
7QCA|1|S60|A|889
7QCA|1|S60|C|890
*
7QCA|1|S60|G|1085
7QCA|1|S60|G|1086
7QCA|1|S60|C|1087
7QCA|1|S60|U|1088
7QCA|1|S60|G|1089

Current chains

Chain S60

RNA SSU

Nearby chains

Chain SDD

40S ribosomal protein S29

Chain SP0

Ribosomal protein S19

Chain SS0

40S ribosomal protein S18

Chain SU0

40S ribosomal protein S20