J3_7QCA_024

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAGUG*CGAGAG*CGAG

Length

15 nucleotides

Bulged bases

7QCA|1|S60|U|1104, 7QCA|1|S60|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|S60|C|1101
7QCA|1|S60|A|1102
7QCA|1|S60|G|1103
7QCA|1|S60|U|1104
7QCA|1|S60|G|1105
*
7QCA|1|S60|C|1139
7QCA|1|S60|G|1140
7QCA|1|S60|A|1141
7QCA|1|S60|G|1142
7QCA|1|S60|A|1143
7QCA|1|S60|G|1144
*
7QCA|1|S60|C|1173
7QCA|1|S60|G|1174
7QCA|1|S60|A|1175
7QCA|1|S60|G|1176

Current chains

Chain S60

RNA SSU

Nearby chains

Chain SF0

40S ribosomal protein S5

Chain SS0

40S ribosomal protein S18

Chain ST0

40S Ribosomal protein S19

Chain SZ0

40S ribosomal protein S25