J3_7QCA_025
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- UUUG*CGAUAGCAAAGAAGUAG*CGAAAA
- Length
- 27 nucleotides
- Bulged bases
- 7QCA|1|L50|U|23, 7QCA|1|L50|U|389, 7QCA|1|L50|A|397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QCA_025 not in the Motif Atlas
- Geometric match to J3_5TBW_061
- Geometric discrepancy: 0.2015
- The information below is about J3_5TBW_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
7QCA|1|L50|U|21
7QCA|1|L50|U|22
7QCA|1|L50|U|23
7QCA|1|L50|G|24
*
7QCA|1|L50|C|386
7QCA|1|L50|G|387
7QCA|1|L50|A|388
7QCA|1|L50|U|389
7QCA|1|L50|A|390
7QCA|1|L50|G|391
7QCA|1|L50|C|392
7QCA|1|L50|A|393
7QCA|1|L50|A|394
7QCA|1|L50|A|395
7QCA|1|L50|G|396
7QCA|1|L50|A|397
7QCA|1|L50|A|398
7QCA|1|L50|G|399
7QCA|1|L50|U|400
7QCA|1|L50|A|401
7QCA|1|L50|G|402
*
7QCA|1|L50|C|409
7QCA|1|L50|G|410
7QCA|1|L50|A|411
7QCA|1|L50|A|412
7QCA|1|L50|A|413
7QCA|1|L50|A|414
Current chains
- Chain L50
- RNA 23S
Nearby chains
- Chain LC0
- 60S ribosomal protein L4
- Chain LJJ
- eL37 LJJ
- Chain LLL
- 60S ribosomal protein L39
- Chain LY0
- 60S ribosomal protein L26
Coloring options: