J3_7QCA_028

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGAAU*AACGAUACAG*CGUAG

Length

20 nucleotides

Bulged bases

7QCA|1|L50|U|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QCA_028 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.1119

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7QCA|1|L50|U|251
7QCA|1|L50|G|252
7QCA|1|L50|A|253
7QCA|1|L50|A|254
7QCA|1|L50|U|255
*
7QCA|1|L50|A|271
7QCA|1|L50|A|272
7QCA|1|L50|C|273
7QCA|1|L50|G|274
7QCA|1|L50|A|275
7QCA|1|L50|U|276
7QCA|1|L50|A|277
7QCA|1|L50|C|278
7QCA|1|L50|A|279
7QCA|1|L50|G|280
*
7QCA|1|L50|C|292
7QCA|1|L50|G|293
7QCA|1|L50|U|294
7QCA|1|L50|A|295
7QCA|1|L50|G|296

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LC0

60S ribosomal protein L4

Chain LY0

60S ribosomal protein L26