J3_7QCA_029

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAAG*CGUAG*CGGAAAG

Length

16 nucleotides

Bulged bases

7QCA|1|L50|A|523, 7QCA|1|L50|G|533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|L50|C|493
7QCA|1|L50|A|494
7QCA|1|L50|A|495
7QCA|1|L50|G|496
*
7QCA|1|L50|C|520
7QCA|1|L50|G|521
7QCA|1|L50|U|522
7QCA|1|L50|A|523
7QCA|1|L50|G|524
*
7QCA|1|L50|C|531
7QCA|1|L50|G|532
7QCA|1|L50|G|533
7QCA|1|L50|A|534
7QCA|1|L50|A|535
7QCA|1|L50|A|536
7QCA|1|L50|G|537

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LAA

uL15 LAA

Chain LC0

60S ribosomal protein L4

Chain LII

60S ribosomal protein L36

Chain LL0

60S ribosomal protein L13

Chain LQ0

60S ribosomal protein L18