J3_7QG8_016

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7QG8|1|N|U|686, 7QG8|1|N|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QG8_016 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0668

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7QG8|1|N|U|683
7QG8|1|N|G|684
7QG8|1|N|A|685
7QG8|1|N|U|686
7QG8|1|N|C|687
7QG8|1|N|U|688
7QG8|1|N|A|689
*
7QG8|1|N|U|773
7QG8|1|N|G|774
7QG8|1|N|G|775
*
7QG8|1|N|C|791
7QG8|1|N|A|792
7QG8|1|N|A|793
7QG8|1|N|A|794

Current chains

Chain N

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L2

Chain p

50S ribosomal protein L34

Chain s

VemP nascent chain